PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G15340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 413aa    MW: 44013.9 Da    PI: 8.1305
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G15340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.53.6e-3097188187
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                      f+kv tpsdv+k++rlv+pk++ae++       +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+
  ONIVA12G15340.1  97 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGiGD 188
                      89***************************955556888************************************************944243 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-4191204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-2994202IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-2595184No hitNo description
PROSITE profilePS5086314.7297201IPR003340B3 DNA binding domain
SMARTSM010196.8E-2197203IPR003340B3 DNA binding domain
PfamPF023621.6E-2797190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS  60
GSSTPFRSDD GAGASGSGGG GGGGGGEAEV VEKEHMFDKV VTPSDVGKLN RLVIPKQYAE  120
KYFPLDAAAN EKGLLLNFED RAGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV  180
SFSRGIGDEA ARHRLFIDWK RRADTRDPLR LPRGLPLPMP LTSHYAPWGI GGGGGFFVPP  240
SPPATLYEHR LRQGLDFRAF NPAAAMGRQV LLFGSARIPP QAPLLARAPS PLHHHYTLQP  300
SGDGVRAAGS PVVLDSVPVI ESPTTAAKRV RLFGVNLDNP HAGGGGPAAA GESSNHGNAL  360
SLQTPAWMRR DPTLRLLELP PHHHHGAESS AASSPSSSSS SKRDAHSALD LDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-459420311118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankKJ8320750.0KJ832075.1 Oryza sativa Indica Group cultivar Nagina 22 B3 transcription factor ngatha 3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624169.10.0PREDICTED: B3 domain-containing protein Os02g0683500
SwissprotQ6EU300.0Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0E0JBJ90.0A0A0E0JBJ9_ORYNI; Uncharacterized protein
STRINGBGIOSGA005835-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.19e-66B3 family protein